MetaSRA

Links to useful resources

Sequence Read Archive

https://www.ncbi.nlm.nih.gov/sra/

Ontologies

MetaSRA annotates samples with the following ontologies:

These ontologies can be searched using the Ontology Lookup Service.

SRAdb

Raw metadata in the SRA has been collected by the SRAdb project:
https://bioconductor.org/packages/release/bioc/html/SRAdb.html

Publication

The publication describing the MetaSRA can be found at Bioinformatics:
https://doi.org/10.1093/bioinformatics/btx334

Source code

The code used to construct the MetaSRA is maintained on GitHub:
https://github.com/deweylab/metasra-pipeline

Users group

To ask questions and recieve updates, join the MetaSRA users group:
https://groups.google.com/forum/#!forum/metasra-users

The MetaSRA team

The MetaSRA is developed and maintained by: